`detect_rpeaks` implements the first part of the Pan & Tompkins algorithms to detect R peaks from a raw ECG signal.
detect_rpeaks(
signal,
sRate,
lowcut = 0,
highcut = 15,
filter_order = 1,
integration_window = 15,
refractory = 200,
return_index = FALSE
)Arguments
- signal
Numerical vector of ECG signal.
- sRate
ECG signal sample rate.
- lowcut
Butterworth bandpass filter low cut value.
- highcut
Butterworth bandpass filter high cut value.
- filter_order
Butterworth bandpass filter order value.
- integration_window
Convolution window size.
- refractory
Minimal space between peaks in milliseconds.
- return_index
If TRUE, the index for each R peak is returned instead of the timing.
Value
A numeric vector of detected R peaks, expressed in seconds* from the start of the signal. This vector can be used in RHRV using `RHRV::LoadBeatVector()`.
*(or samples if return_index is TRUE)
References
Pan, Jiapu, and Willis J. Tompkins. "A real-time QRS detection algorithm." IEEE Trans. Biomed. Eng 32, no. 3 (1985): 230-236.
Examples
path <- paste0(tempdir(),"rec_1.dat")
download.file("https://physionet.org/files/ecgiddb/1.0.0/Person_01/rec_1.dat?download",path)
ecg <- readBin(path,integer(),500*30)
peaks <- detect_rpeaks(ecg, sRate = 500)
unlink(path)
print(peaks)
#> [1] 0.708 3.206 4.140 5.060 6.276 6.886 7.756 9.440 11.024 11.762
#> [11] 13.986 14.740 16.322 17.138 18.000 19.708 19.986
ecg.df <- data.frame(ECG = ecg,Seconds = c(1:length(ecg))/500)
library(ggplot2)
ggplot(ecg.df,aes(x = Seconds,y = ECG)) +
geom_line() + theme_bw() +
geom_vline(data.frame(p = peaks),mapping = aes(xintercept = p), linetype="dashed",color = "red")
